Cell-free reconstitution of autophagy to dissect molecular mechanisms

Publikacje

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

Autorzy: Daniel J. Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, Marie H. Abildgaard, Yakubu Princely Abudu, Abraham Acevedo-Arozena, Iannis E. Adamopoulos, Khosrow Adeli, Timon E. Adolph, Annagrazia Adornetto, Elma Aflaki, Galila Agam, Anupam Agarwal, Bharat B. Aggarwal, Maria Agnello, Patrizia Agostinis, Javed N. Agrewala, Alexander A
Opublikowane w: Autophagy, Numer 2, 2020, ISSN 1554-8627
Wydawca: Landes Bioscience

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

Autorzy: Daniel J. Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, Marie H. Abildgaard, Yakubu Princely Abudu, Abraham Acevedo-Arozena, Iannis E. Adamopoulos, Khosrow Adeli, Timon E. Adolph, Annagrazia Adornetto, Elma Aflaki, Galila Agam, Anupam Agarwal, Bharat B. Aggarwal, Maria Agnello, Patrizia Agostinis, Javed N. Agrewala, Alexander A
Opublikowane w: Autophagy, 2021, ISSN 1554-8627
Wydawca: Landes Bioscience
DOI: 10.1080/15548627.2020.1797280

ULK1-mediated phosphorylation regulates the conserved role of YKT6 in autophagy

Autorzy: Pablo Sánchez-Martín; Franziska Kriegenburg; Ludovico Alves; Julius Adam; Jana Elsaesser; Riccardo Babic; Hector Mancilla; Mariya Licheva; Georg Tascher; Christian Münch; Stefan Eimer; Claudine Kraft
Opublikowane w: Journal of Cell Science, Numer 5, 2023, ISSN 0021-9533
Wydawca: The Company of Biologists Ltd.
DOI: 10.1242/jcs.260546

Autophagosomes are formed at a distinct cellular structure

Autorzy: David M. Hollenstein, Claudine Kraft
Opublikowane w: Current Opinion in Cell Biology, Numer 65, 2020, Strona(/y) 50-57, ISSN 0955-0674
Wydawca: Elsevier BV
DOI: 10.1016/j.ceb.2020.02.012

Autophagy in major human diseases

Autorzy: Daniel J Klionsky, Giulia Petroni, Ravi K Amaravadi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo‐San Pedro, Ken Cadwell, Francesco Cecconi, Augustine M K Choi, Mary E Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo, Ana Maria Cuervo, Vojo Deretic, Ivan Dikic, Zvulun Elazar, Eeva‐Liisa Eskelinen, Gian Maria Fimia, David A Gewirtz, Douglas R Green, Malene Han
Opublikowane w: EMBO Reports, 2021, ISSN 0261-4189
Wydawca: Nature Publishing Group
DOI: 10.15252/embj.2021108863

Atg1 kinase regulates autophagosome‐vacuole fusion by controlling SNARE bundling

Autorzy: Saskia Barz, Franziska Kriegenburg, Anna Henning, Anuradha Bhattacharya, Hector Mancilla, Pablo Sánchez‐Martín, Claudine Kraft
Opublikowane w: EMBO reports, 2020, ISSN 1469-221X
Wydawca: Nature Publishing Group
DOI: 10.15252/embr.202051869

Phosphoregulation of the autophagy machinery by kinases and phosphatases

Autorzy: Mariya Licheva, Babu Raman, Claudine Kraft, Fulvio Reggiori
Opublikowane w: Autophagy, 2021, Strona(/y) 1-20, ISSN 1554-8627
Wydawca: Landes Bioscience
DOI: 10.1080/15548627.2021.1909407

Small but mighty: Atg8s and Rabs in Membrane Dynamics during Autophagy

Autorzy: Saskia Barz, Franziska Kriegenburg, Pablo Sánchez-Martín, Claudine Kraft
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 2021, Strona(/y) 119064, ISSN 0167-4889
Wydawca: Elsevier BV
DOI: 10.1016/j.bbamcr.2021.119064

Role of the small protein Mco6 in the mitochondrial sorting and assembly machinery

Autorzy: Jon V. Busto; Iniyan Ganesan; Hannah Mathar; Conny Steiert; Eva F. Schneider; Sebastian P. Straub; Lars Ellenrieder; Jiyao Song; Sebastian B. Stiller; Philipp Lübbert; Ritwika Chatterjee; Jana Elsaesser; Laura Melchionda; Christina Schug; Fabian den Brave; Uwe Schulte; Till Klecker; Claudine Kraft; Bernd Fakler; Thomas Becker; Nils Wiedemann
Opublikowane w: cell reports, Numer 2, 2024, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2024.113805

Phagophore closure, autophagosome maturation and autophagosome fusion during macroautophagy in the yeast <i>Saccharomyces cerevisiae</i>

Autorzy: Claudine Kraft; Fulvio Reggiori
Opublikowane w: febs letters, Numer 2, 2023, ISSN 0014-5793
Wydawca: Elsevier BV
DOI: 10.1002/1873-3468.14720

Driving next-generation autophagy researchers towards translation (DRIVE), an international PhD training program on autophagy

Autorzy: Claudine Kraft, Patricia Boya, Patrice Codogno, Zvulun Elazar, Eeva-Liisa Eskelinen, Judith Farrés, Vladimir Kirkin, Heinz Jungbluth, Ana Martinez, Ole Pless, Charlotte Primard, Tassula Proikas-Cezanne, Anne Simonsen, Fulvio Reggiori
Opublikowane w: Autophagy, Numer 15/2, 2018, Strona(/y) 347-351, ISSN 1554-8627
Wydawca: Landes Bioscience
DOI: 10.1080/15548627.2018.1515532

The multi-functional SNARE protein Ykt6 in autophagosomal fusion processes

Autorzy: Franziska Kriegenburg, Levent Bas, Jieqiong Gao, Christian Ungermann, Claudine Kraft
Opublikowane w: Cell Cycle, Numer 18/6-7, 2019, Strona(/y) 639-651, ISSN 1538-4101
Wydawca: Landes Bioscience
DOI: 10.1080/15384101.2019.1580488

An Early mtUPR: Redistribution of the Nuclear Transcription Factor Rox1 to Mitochondria Protects against Intramitochondrial Proteotoxic Aggregates

Autorzy: Daniel Poveda-Huertes, Stanka Matic, Adinarayana Marada, Lukas Habernig, Mariya Licheva, Lisa Myketin, Ralf Gilsbach, Sergi Tosal-Castano, Daniel Papinski, Patrycja Mulica, Oliver Kretz, Cansu Kücükköse, Asli Aras Taskin, Lutz Hein, Claudine Kraft, Sabrina Büttner, Chris Meisinger, F.-Nora Vögtle
Opublikowane w: Molecular Cell, Numer 77/1, 2020, Strona(/y) 180-188.e9, ISSN 1097-2765
Wydawca: Cell Press
DOI: 10.1016/j.molcel.2019.09.026

Reconstitution reveals Ykt6 as the autophagosomal SNARE in autophagosome–vacuole fusion

Autorzy: Levent Bas, Daniel Papinski, Mariya Licheva, Raffaela Torggler, Sabrina Rohringer, Martina Schuschnig, Claudine Kraft
Opublikowane w: The Journal of Cell Biology, Numer 217/10, 2018, Strona(/y) 3656-3669, ISSN 0021-9525
Wydawca: Rockefeller University Press
DOI: 10.1083/jcb.201804028

Ykt6 mediates autophagosome-vacuole fusion

Autorzy: Levent Bas, Daniel Papinski, Claudine Kraft
Opublikowane w: Molecular & Cellular Oncology, Numer 5/6, 2018, Strona(/y) e1526006, ISSN 2372-3556
Wydawca: Taylor and Francis
DOI: 10.1080/23723556.2018.1526006

Vac8 spatially confines autophagosome formation at the vacuole in S. cerevisiae

Autorzy: David M. Hollenstein, Rubén Gómez-Sánchez, Akif Ciftci, Franziska Kriegenburg, Muriel Mari, Raffaela Torggler, Mariya Licheva, Fulvio Reggiori, Claudine Kraft
Opublikowane w: Journal of Cell Science, Numer 132/22, 2019, Strona(/y) jcs235002, ISSN 0021-9533
Wydawca: The Company of Biologists Ltd.
DOI: 10.1242/jcs.235002

The lipid flippase Drs2 regulates anterograde transport of Atg9 during autophagy

Autorzy: Franziska Kriegenburg; Wouter Huiting; Fleur van Buuren-Broek; Emma Zwilling; Ralph Hardenberg; Muriel Mari; Claudine Kraft; Fulvio Reggiori
Opublikowane w: Autophagy Reports, 1(1), 345 - 367, Numer 1, 2022, ISSN 2769-4127
Wydawca: Landes Bioscience
DOI: 10.1080/27694127.2022.2104781

Posttranslational insertion of small membrane proteins by the bacterial signal recognition particle

Autorzy: Ruth Steinberg, Andrea Origi, Ana Natriashvili, Pinku Sarmah, Mariya Licheva, Princess M. Walker, Claudine Kraft, Stephen High, Joen Luirink, Wei. Q. Shi, Martin Helmstädter, Maximilian H. Ulbrich, Hans-Georg Koch
Opublikowane w: PLOS Biology, Numer 18/9, 2020, Strona(/y) e3000874, ISSN 1545-7885
Wydawca: Plos Biology
DOI: 10.1371/journal.pbio.3000874

Dual role of Mic10 in mitochondrial cristae organization and ATP synthase-linked metabolic adaptation and respiratory growth

Autorzy: Heike Rampelt, Florian Wollweber, Mariya Licheva,Rinse de Boer, Inge Perschil, Liesa Steidle, Thomas Becker, Maria Bohnert, Ida van der Klei, Claudine Kraft, Martin van der Laan, Nikolaus Pfanner
Opublikowane w: Cell Reports, 2022, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2021.110290

Spatial control of avidity regulates initiation and progression of selective autophagy.

Autorzy: Hollenstein David M, Licheva Mariya, Konradi Nicole, Schweida David, Mancilla Hector, Mari Muriel, Reggiori Fulvio, Kraft Claudine
Opublikowane w: Nature Communications, 2021, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-021-27420-3

Decoding the function of Atg13 phosphorylation reveals a role of Atg11 in bulk autophagy initiation

Autorzy: Anuradha Bhattacharya; Raffaela Torggler; Wolfgang Reiter; Natalie Romanov; Mariya Licheva; Akif Ciftci; Muriel Mari; Lena Kolb; Dominik Kaiser; Fulvio Reggiori; Gustav Ammerer; David M Hollenstein; Claudine Kraft
Opublikowane w: Embo reports, Numer 2, 2024, ISSN 1469-221X
Wydawca: Nature Publishing Group
DOI: 10.1038/s44319-023-00055-9

Global kinome profiling reveals DYRK1A as critical activator of the human mitochondrial import machinery

Autorzy: Corvin Walter, Adinarayana Marada, Tamara Suhm, Ralf Ernsberger, era Muders, Cansu Kücükköse, Pablo Sánchez-Martín, Zehan Hu, Abhishek Aich, Stefan Loroch, Fiorella Andrea Solari, Daniel Poveda-Huertes, Alexandra Schwierzok, Henrike Pommerening, Stanka Matic, Jan Brix, Albert Sickmann, Claudine Kraft, Jörn Dengjel, ven Dennerlein, Tilman Brummer, F.-Nora Vögtle, Chris Meisinger
Opublikowane w: Nature Communications, 2021, ISSN 0000-0000
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-021-24426-9

Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context

Autorzy: Marcel Morgenstern, Christian D. Peikert, Philipp Luebbert, Ida Suppanz, Cinzia Klemm, Oliver Alka, Conny Steiert, Nataliia Naumenko, Alexander Schendzielorz, Laura Melchionda, Wignand W.D. Muehlhaeuser, Bettina Knapp, Jakob D. Busch, Sebastian B. Stiller, Stefan Dannenmaier, Caroline Lindau, Mariya Licheva, Christopher Eickhorst, Riccardo Galbusera, Ralf M. Zerbes, Michael T. Ryan, Claudine Kraf
Opublikowane w: Cell Metabolism, 2021, ISSN 1550-4131
Wydawca: Cell Press
DOI: 10.1016/j.cmet.2021.11.001

The mechanism of macroautophagy: The movie

Autorzy: Reggiori F Boya P, da Costa D, Elazar Z, Eskelinen E, Farrés J, Guettler S, Kraft C, Jungbluth H, Martinez A, Moel E, Pless O, Proikas-Cezanne T, Simonsen A
Opublikowane w: Autophagy, 2022
Wydawca: Landes Bioscience
DOI: 10.1080/27694127.2022.2096115

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