Next generation imaging technologies to probe structure and function of biological specimen across scales in their natural context

Informacje na temat projektu

IMAGINE

Identyfikator umowy o grant: 101094250

DOI

10.3030/101094250

Data podpisania przez KE 2 Grudnia 2022

Data rozpoczęcia 1 Maja 2023

Data zakończenia 30 Kwietnia 2028

Finansowanie w ramach

• Research infrastructures

Koszt całkowity

€ 9 569 677,52

Wkład UE

€ 9 569 677,50

Koordynowany przez

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (13)

Report on commonalities for technology validation across participating RIs

Deliverable 36 (also D11.1) is associated with WP11 and is part of Task 11.1: Alignment of European Research Infrastructures and broadening the impact of the new technologies (Lead: Instruct ERIC; Participants: Euro-BioImaging, EMBRC ERIC, ESRF, EMBL)

Publication of project website

Deliverable 44 (also D13.3) is associated with WP13 and pat of Task 13.2: Establish and implement internal and external communication channels (Lead: EMBL-HD; Participants: Euro-BioImaging ERIC, Instruct ERIC)

Report on defined validation steps for implementation of new technologies developed in WP1 and 2

Deliverable 26 (also D8.1) is associated with WP8 and concludes Task 8.1: Definition of implementation tasks to validate new technologies in each Life Science sector (Lead: Instruct ERIC; Participants: Euro-BioImaging, EMBRC ERIC)

Sorting decision trees established for the sorting of unknown plankton species from field samples

Deliverable 14 (also D5.2) is associated with WP5 and is part of task 5.1: High-speed image-enabled flow cytometric sorting of single cells from plankton samples (up to 50µm in size) (Lead: EMBL-HD; Participants: SU, CCMAR, Uvigo, U Minho)

Report on result of cryo-fluorescence fluorophore screening

Deliverable 9 (also D3.2) is associated with WP3 and is part of task 3.2: Development of correlative cryo-super resolution microscopy (Lead: EMBL-HD; Participants: LUMC, Leica)

Report on open access requirements for new bioimaging technologies

Deliverable 22 (also D7.1) is associated with WP7 and concludes task 7.1: Hand-over of new bioimaging technologies to validation under open user access conditions (Lead: EuBI Bio-Hub (hosted at EMBL); Participants: IIT, AT-BioImaging, UCPH, INSERM, IBMC, IMG CAS)

Plan for Dissemination and Exploitation including Communication Activities

This deliverable is an obligatory to be submitted and updated on each periodic report of the project. The first draft within the first period has been submitted through EC Portal communication channel with the EC PO

Guidelines on coordination of technology transfer between academic and industry partners

Deliverable 39 (also D12.1) is associated with WP12 and is part of Task 12.1: Coordinated approach to technology transfer in scientific institutions (Lead: EMBLEM, Participants: EBIB, Instruct ERIC, EMBL (GR and HD), KTH, ESRF, MPG, ARINAX, Leica, PSI)

Report on the suitability of the new developed technologies for samples of marine origin

Deliverable 30 (also D9.1) is associated with WP9 and concludes Task 9.2: Suitability of new technologies for marine research (M13-M24) (Lead: EMBRC ERIC; Participants: HCMR, SU, CCMAR, UVIGO, UPV/EHU)

Report on establishment of Project Management structure and procedures

Deliverable 42 (also D13.1) is associated with WP13 and is part of Task 13.1: Establish and implement the Project Management structure (Lead: EMBL-HD; Participants: Euro-BioImaging, Instruct ERIC, EMBRC ERIC, ESRF, MPG, SU)

Validation guidelines for new bioimaging technologies and selection criteria for imaging RIs

Deliverable 23 (also D7.2) is associated with WP7 and concludes Task 7.2: Development of a validation process (Lead: Euro-BioImaging Bio-Hub (hosted at EMBL); Participants: IIT, AT-BioImaging, UCPH, INSERM, IBMC, IMG CAS)

Specific validation plans for each organization, RI or Node published; selection of validation Nodes

Deliverable 27 (also D8.2) is associated with WP8 and concludes task 8.2: Execution of validation processes specific for implementation in structural biology applications and their integration with cross-technologies, including evaluation steps and end points (Lead: Instruct ERIC; Participants: Euro-BioImaging, EMBRC ERIC, CEITEC MU, CNRS)

Updated Plan for Dissemination and Exploitation including Communication Activities

Deliverable 45 (also D13.4) is associated with WP13 and is part of Task 13.2: Establish and implement internal and external communication channels; and the updated version of D13.6(Lead: EMBL-HD; Participants: Euro-BioImaging ERIC, Instruct ERIC)

Demonstrators, pilots, prototypes (3)

Tested workflows for the sorting of specific plankton species

Deliverable 13 (also D5.1) is associated with WP5 and is part of task 5.1: High-speed image-enabled flow cytometric sorting of single cells from plankton samples (up to 50µm in size) (Lead: EMBL-HD; Participants: SU, CCMAR, Uvigo, U Minho)

Proof of concept of a fluidics system for transport, imaging & sorting of mesoscopic marine organisms

Deliverable 16 (also D5.4) is associated with WP5 and part of task 5.2: Development of a workflow for mesoscopic imaging-based sorting of marine organisms (50µm to 2mm in size) (Lead: EMBL-HD; Participants: SU, CCMAR)

Demonstration of volume imaging of freely behaving specimens using OPM and OCM technologies

Deliverable 11 (also D4.1) is associated with WP4 and concludes task 4.1: Multi-modal volume imaging of living organisms (Lead: EMBL-HD; Participant: HT, CCMAR, Leica)

Data Management Plan (1)

IMAGINE Data Management Plan

Deliverable 43 (also D13.2) is associated with WP13 and concludes Task 13.1: Establish and implement the Project Management structure (Lead: EMBL-HD; Participants: Euro-BioImaging, Instruct ERIC, EMBRC ERIC, ESRF, MPG, SU)

Publikacje

Peer reviewed articles (48)

Experimental comparison of X-ray ptychographic and holographic nanotomography of metal-stained neuronal tissue

Autorzy: Alexandra Pacureanu, Thomas Thies, Carles Bosch, Mirko Holler, Manuel Guizar-Sicairos, Elisabeth Müller, Joakim Reuteler, Dmitry Karpov, Andreas T. Schaefer, Peter Cloetens, Andreas Menzel, and Ana Diaz
Opublikowane w: Optics Express, ISSN 1094-4087
Wydawca: Optics Express
DOI: 10.1364/OE.563186

Exploring shaped focused ion beams for lamella preparation

Autorzy: Juergen Plitzko, Sven Klumpe
Opublikowane w: BioRxiv, 2025, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2025.04.01.646235

Cryo-electron tomography: <i>en route</i> to the molecular anatomy of organisms and tissues

Autorzy: Oda Helene Schiøtz, Sven Klumpe, Juergen M. Plitzko, Christoph J. O. Kaiser
Opublikowane w: Biochemical Society Transactions, Numer 52, 2024, ISSN 0300-5127
Wydawca: Portland Press Ltd.
DOI: 10.1042/BST20240173

Cryo-plasma FIB/SEM volume imaging of biological specimens

Autorzy: Dumoux, M., Glen, T., Smith, J.L., Ho, E.M., Perdigão, L.M., Pennington, A., Klumpe, S., Yee, N.B., Farmer, D.A., Lai, P.Y. and Bowles, W.
Opublikowane w: eLife ScienceseLife ScienceseLife Sciences, Numer eLife 12:e83623., ISSN 2050-084X
Wydawca: eLife Sciences
DOI: 10.7554/ELIFE.83623

Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images

Autorzy: Elena Buglakova, Anwai Archit, Edoardo D'Imprima, Julia Mahamid, Constantin Pape, Anna Kreshuk
Opublikowane w: Cornell University Arxiv Computer Vision and Pattern Recognition, 2025, ISSN 2414-1895
Wydawca: Cornell University Arxiv Computer Vision and Pattern Recognition
DOI: 10.48550/ARXIV.2503.19545

Reduction of SEM charging artefacts in native cryogenic biological samples

Autorzy: Abner Velazco, Thomas Glen, Sven Klumpe, Avery Pennington, Jianguo Zhang, Jake L. R. Smith, Calina Glynn, William Bowles, Maryna Kobylynska, Roland A. Fleck, James H. Naismith, Judy S. Kim, Michele C. Darrow, Michael Grange, Angus I. Kirkland, Maud Dumoux
Opublikowane w: Nature Communications, Numer 16, ISSN 2041-1723
Wydawca: Nature Communications
DOI: 10.1038/S41467

Accelerated dynamic light sheet microscopy: unifying time-varying patterned illumination and low-rank and sparsity constrained reconstruction

Autorzy: Marco Tobia Vitali, Alessia Candeo, Andrea Farina, Paolo Pozzi, Alessia Brix, Andrea Bassi, Teresa M Correia
Opublikowane w: Journal of Physics: Photonics, Numer 7, 2025, ISSN 2515-7647
Wydawca: IOP Publishing
DOI: 10.1088/2515-7647/ADAD23

Cryo-plasma FIB/SEM volume imaging of biological specimens

Autorzy: Dumoux, M., Glen, T., Smith, J.L., Ho, E.M., Perdigão, L.M., Pennington, A., Klumpe, S., Yee, N.B., Farmer, D.A., Lai, P.Y. and Bowles, W.
Opublikowane w: eLife Sciences, Numer eLife 12:e83623., 2023, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/eLife.83623

Plasma FIB milling for the determination of structures in situ

Autorzy: Casper Berger, Maud Dumoux, Thomas Glen, Neville B.-y. Yee, John M. Mitchels, Zuzana Patáková, Michele C. Darrow, James H. Naismith & Michael Grange
Opublikowane w: Nature Communications, Numer Article number 629 (2023), 2023, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-023-36372-9

Accelerated dynamic light sheet microscopy: unifying time-varying patterned illumination and low-rank and sparsity constrained reconstruction

Autorzy: Marco Tobia Vitali, Alessia Candeo, Andrea Farina, Paolo Pozzi, Alessia Brix, Andrea Bassi, Teresa M Correia
Opublikowane w: Journal of Physics: Photonics, Numer 7, ISSN 2515-7647
Wydawca: Journal of Physics: Photonics
DOI: 10.1088/2515

Cryo-FIB milling for cryo-ET - shaping the future for biological specimens

Autorzy: Juergen Plitzko, Sven Klumpe
Opublikowane w: Current Opinion in Structural Biology, Numer Volume 94, October 2025, 103138, 2025, ISSN 0922-3444
Wydawca: Elsevier
DOI: 10.1016/J.SBI.2025.103138

Molecular profiling of sponge deflation reveals an ancient relaxant-inflammatory response.

Autorzy: Fabian Ruperti; Isabelle Becher; Anniek Stokkermans; Ling Wang; Nick Marschlich; Clement Potel; Emanuel Maus; Frank Stein; Bernhard Drotleff; Klaske Schippers; Michael Nickel; Robert Prevedel; Jacob M. Musser; Mikhail M. Savitski; Detlev Arendt
Opublikowane w: bioRxiv preprint server, Numer Vol. 34, Numer 2 (2024), ISSN 0960-9822
Wydawca: bioRxiv preprint server
DOI: 10.1101/2023.08.02.551666

Cryo-FIB milling for cryo-ET - shaping the future for biological specimens

Autorzy: Juergen Plitzko, Sven Klumpe
Opublikowane w: Current Opinion in Structural Biology, Numer Volume 94, October 2025, 103138, ISSN 0959-440X
Wydawca: Current Opinion in Structural Biology
DOI: 10.1016/J.SBI.2025.103138

Exploring shaped focused ion beams for lamella preparation

Autorzy: Juergen Plitzko, Sven Klumpe
Opublikowane w: BioRxiv, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2025.04.01.646235

Model-based deep learning framework for accelerated optical projection tomography

Autorzy: Marcos Obando, Andrea Bassi, Nicolas Ducros, Germán Mato & Teresa M. Correia
Opublikowane w: Nature - Scientific Reports, Numer Article no. 21753 (2023), ISSN 2045-2322
Wydawca: Nature - Scientific Reports
DOI: 10.1038/S41598-023-47650-3

Reduction of SEM charging artefacts in native cryogenic biological samples

Autorzy: Abner Velazco, Thomas Glen, Sven Klumpe, Avery Pennington, Jianguo Zhang, Jake L. R. Smith, Calina Glynn, William Bowles, Maryna Kobylynska, Roland A. Fleck, James H. Naismith, Judy S. Kim, Michele C.
Opublikowane w: Nature Communications, Numer 16, 2025, ISSN 2041-1723
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-60545-3

Cryo-electron tomography: en route to the molecular anatomy of organisms and tissues

Autorzy: Oda Helene Schiøtz, Sven Klumpe, Juergen M. Plitzko, Christoph J. O. Kaiser
Opublikowane w: Biochemical Society Transactions, Numer 52, ISSN 0300-5127
Wydawca: Biochemical Society Transactions
DOI: 10.1042/BST20240173

Colour science with lasers, gummy bears, and rainbows (educational paper)

Autorzy: Rute C. Félix, David Paleček, Teresa M. Correia
Opublikowane w: Science in School: The European Journal for Science Teachers Numer 66, Numer Numer 66, ISSN 1818-0353
Wydawca: Science in School: The European Journal for Science Teachers Issue 66
DOI: 10.5281/ZENODO.10608950

A whole-body cell type atlas mapped into an electron microscopy volume of an annelid worm

Autorzy: Oel Adam Phillip, Cros Cyril Christophe Daniel Robert, Pan Leslie, Buglakova Elena, Haury Parra Samuel, Santangeli Luca, Gerber Tobias, Papalopoulos Nikolaos, Vergara Hernando Martinez, Puga David, Di
Opublikowane w: BioRxiv, 2025, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2025.10.30.685666

EasyGrid: A versatile platform for automated cryo-EM sample preparation and quality control

Autorzy: Olivier Gemin, Victor Armijo, Michael Hons, Caroline Bissardon, Romain Linares, Matthew W. Bowler, Georg Wolff,, Kirill Kovalev, Anastasiia Babenko, Veijo T. Salo, Sarah Schneider, Christopher Rossi, Léa Lecomte, Thibault Deckers, Kévin Lauzier, Robert Ja
Opublikowane w: BioRxiv, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2024.01.18.576170

ToMoDL: A model-based deep learning framework for optical projection tomography

Autorzy: Marcos Obando, Andrea Bassi, Nicolas Ducros, Germán Mato, Teresa Correia
Opublikowane w: Research Square, Numer Article no. 21735 (2023), 2023, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-023-47650-3

Streamlining segmentation of cryo-electron tomography datasets with Ais

Autorzy: T. Sharp
Opublikowane w: Structural Biology and Molecular Biophysics, 2024, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/ELIFE.98552.3

Plasma FIB milling for the determination of structures in situ

Autorzy: Casper Berger, Maud Dumoux, Thomas Glen, Neville B.-y. Yee, John M. Mitchels, Zuzana Patáková, Michele C. Darrow, James H. Naismith & Michael Grange
Opublikowane w: Nature Communications, Numer Article number 629 (2023), ISSN 2041-1723
Wydawca: Nature Communications
DOI: 10.1038/S41467-023-36372-9

Mesoscopic axially swept oblique plane microscope for the imaging of freely moving organisms with near-isotropic resolution

Autorzy: Samuel Davis, Sebastian Hambura, Robert Prevedel
Opublikowane w: Biomedical Optics Express, Numer Vol. 15, Numer 12, pp. 6715-6724, 2024, ISSN 2156-7085
Wydawca: Biomedical Optics Express
DOI: 10.1364/BOE.537262

Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images

Autorzy: Elena Buglakova, Anwai Archit, Edoardo D'Imprima, Julia Mahamid, Constantin Pape, Anna Kreshuk
Opublikowane w: Cornell University Arxiv Computer Vision and Pattern Recognition, ISSN 2331-8422
Wydawca: Cornell University Arxiv Computer Vision and Pattern Recognition
DOI: 10.48550/ARXIV.2503.19545

denoiSplit: a method for joint microscopy image splitting and unsupervised denoising

Autorzy: A. Ashesh, F. Jug
Opublikowane w: Cornell University Arxiv Computer Vision and Pattern Recognition (cs.CV), 2024, ISSN 2331-8422
Wydawca: Cornell University Arxiv Computer Vision and Pattern Recognition (cs.CV)
DOI: 10.48550/ARXIV.2403.11854

Serial Lift-Out: sampling the molecular anatomy of whole organisms

Autorzy: Oda Helene Schiøtz, Christoph J. O. Kaiser, Sven Klumpe, Dustin R. Morado, Matthias Poege, Jonathan Schneider, Florian Beck, David P. Klebl, Christopher Thompson & Jürgen M. Plitzko
Opublikowane w: Nature Methods, 2023, ISSN 1548-7105
Wydawca: Nature Methods
DOI: 10.1038/s41592-023-02113-5

High Throughput Tomography (HiTT) on EMBL beamline P14 on PETRA III

Autorzy: Albers, Jonas, Marina Nikolova, Angelika Svetlove, Nedal Darif, Matthew J. Lawson, Thomas R. Schneider, Yannick Schwab, Gleb Bourenkov, and Elizabeth Duke
Opublikowane w: Journal of Synchrotron Radiation, Numer Volume 3, Part 1, ISSN 0909-0495
Wydawca: Journal of Synchrotron Radiation
DOI: 10.1107/S160057752300944X

Scientific Reports

Autorzy: Marcos Obando, Andrea Bassi, Nicolas Ducros, Germán Mato, Teresa M. Correia
Opublikowane w: Scientific Reports, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/S41598

ToMoDL: A model-based deep learning framework for optical projection tomography

Autorzy: Marcos Obando, Andrea Bassi, Nicolas Ducros, Germán Mato, Teresa Correia
Opublikowane w: Research Square, ISSN 2693-5015
Wydawca: Research Square
DOI: 10.21203/RS.3.RS

High Throughput Tomography (HiTT) on EMBL beamline P14 on PETRA III

Autorzy: Albers, Jonas, Marina Nikolova, Angelika Svetlove, Nedal Darif, Matthew J. Lawson, Thomas R. Schneider, Yannick Schwab, Gleb Bourenkov, and Elizabeth Duke
Opublikowane w: Journal of Synchrotron Radiation, Numer Volume 3, Part 1, 2024, ISSN 1600-5775
Wydawca: Journal of Synchrotron Radiation
DOI: 10.1107/S160057752300944X

Xenon plasma focused ion beam lamella fabrication on high-pressure frozen specimens for structural cell biology

Autorzy: Casper Berger, Helena Watson, James H. Naismith, Maud Dumoux, Michael Grange
Opublikowane w: Nature Communications, Numer 16, 2025, ISSN 2041-1723
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-57493-3

Mesoscopic axially swept oblique plane microscope for the imaging of freely moving organisms with near-isotropic resolution

Autorzy: Samuel Davis, Sebastian Hambura, Robert Prevedel
Opublikowane w: Biomedical Optics Express, Numer Vol. 15, Numer 12, pp. 6715-6724, ISSN 2515-7647
Wydawca: Biomedical Optics Express
DOI: 10.1364/BOE.537262

Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii

Autorzy: Juergen Plitzko
Opublikowane w: BioRxiv, 2024, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2024.12.28.630444V1

Colour science with lasers, gummy bears, and rainbows (educational paper)

Autorzy: Rute C. Félix, David Paleček, Teresa M. Correia
Opublikowane w: Science in School: The European Journal for Science Teachers Numer 66, Numer Numer 66, 2024, ISSN 0140-5284
Wydawca: Science in School: The European Journal for Science Teachers
DOI: 10.5281/zenodo.10608950

Xenon plasma focused ion beam lamella fabrication on high-pressure frozen specimens for structural cell biology

Autorzy: Casper Berger, Helena Watson, James H. Naismith, Maud Dumoux, Michael Grange
Opublikowane w: Nature Communications, Numer 16, ISSN 2041-1723
Wydawca: Nature Communications
DOI: 10.1038/S41467

Scaling data analyses in cellular cryoET using comprehensive segmentation

Autorzy: M. G. F. Last, L. M. Voortman, T. H. Sharp
Opublikowane w: bioRxiv preprint server, ISSN 2692-8205
Wydawca: bioRxiv preprint server
DOI: 10.1101/2025.01.16.633326

Journal of Structural Biology

Autorzy: Mart G.F. Last; Maartje van Klaveren; Lennert Janssen; Nickels Jensen; Isabelle Jansen; Stefan Jakobs; Lenard M. Voortman; Thomas H. Sharp
Opublikowane w: Journal of Structural Biology, Numer 217 (4), Article 108267, ISSN 1047-8477
Wydawca: Academic Press
DOI: 10.1016/J.JSB.2025.108267

Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii

Autorzy: Juergen Plitzko
Opublikowane w: BioRxiv, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2024.12.28.630444

Model-based deep learning framework for accelerated optical projection tomography

Autorzy: Marcos Obando, Andrea Bassi, Nicolas Ducros, Germán Mato & Teresa M. Correia
Opublikowane w: Nature - Scientific Reports, Numer Article no. 21753 (2023), 2023, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-023-47650-3

Making plant tissue accessible for cryo-electron tomography

Autorzy: Juergen Plitzko, Christoph Kaiser, Sven Klumpe
Opublikowane w: Plant Biology, ISSN 2050-084X
Wydawca: eLife
DOI: 10.7554/ELIFE.106455.1

A whole-body cell type atlas mapped into an electron microscopy volume of an annelid worm

Autorzy: Oel Adam Phillip, Cros Cyril Christophe Daniel Robert, Pan Leslie, Buglakova Elena, Haury Parra Samuel, Santangeli Luca, Gerber Tobias, Papalopoulos Nikolaos, Vergara Hernando Martinez, Puga David, Disela Vanessa, Niederhaus Lara, Bertucci Paola Yanina, W
Opublikowane w: BioRxiv, ISSN 2692-8205
Wydawca: BioRXiv
DOI: 10.1101/2025.10.30.685666

denoiSplit: a method for joint microscopy image splitting and unsupervised denoising

Autorzy: A. Ashesh, F. Jug
Opublikowane w: Cornell University Arxiv Computer Vision and Pattern Recognition (cs.CV), ISSN 2331-8422
Wydawca: Cornell University Arxiv Computer Vision and Pattern Recognition (cs.CV)
DOI: 10.48550/ARXIV.2403.11854

Serial Lift-Out: sampling the molecular anatomy of whole organisms

Autorzy: Oda Helene Schiøtz, Christoph J. O. Kaiser, Sven Klumpe, Dustin R. Morado, Matthias Poege, Jonathan Schneider, Florian Beck, David P. Klebl, Christopher Thompson & Jürgen M. Plitzko
Opublikowane w: Nature Methods, ISSN 1548-7091
Wydawca: Nature Methods
DOI: 10.1038/S41592-023-02113-5

Microplit: Semantic Unmixing of Fluorescent Microscopy Data

Autorzy: A. Ashesh, F. Jug
Opublikowane w: BioRxiv, ISSN 0909-0495
Wydawca: BioRxiv
DOI: 10.1101/2025.02.10.637323

Making plant tissue accessible for cryo-electron tomography

Autorzy: Juergen Plitzko, Christoph Kaiser, Sven Klumpe
Opublikowane w: Plant Biology, 2025, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/ELIFE.106455.1

Microplit: Semantic Unmixing of Fluorescent Microscopy Data

Autorzy: A. Ashesh, F. Jug
Opublikowane w: BioRxiv, 2025, ISSN 2692-8205
Wydawca: BioRxiv
DOI: 10.1101/2025.02.10.637323

Streamlining segmentation of cryo-electron tomography datasets with Ais

Autorzy: T. Sharp
Opublikowane w: Structural Biology and Molecular Biophysics, ISSN 2050-084X
Wydawca: Structural Biology and Molecular Biophysics
DOI: 10.7554/ELIFE.98552.3

Conference proceedings (2)

μSplit: image decomposition for fluorescence microscopy

Autorzy: Ashesh Ashesh, Alexander Krull, Moises Di Sante, Francesco Pasqualini, Florian Jug;
Opublikowane w: Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV), 2023, ISSN 2380-7504
Wydawca: ICCV Paris
DOI: 10.1109/ICCV51070.2023.01940

μSplit: image decomposition for fluorescence microscopy

Autorzy: Ashesh Ashesh, Alexander Krull, Moises Di Sante, Francesco Pasqualini, Florian Jug;
Opublikowane w: Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV), ISSN 2380-7504
Wydawca: Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV)
DOI: 10.1109/ICCV51070.2023

Other (1)

EasyGrid: A versatile platform for automated cryo-EM sample preparation and quality control

Autorzy: Olivier Gemin, Victor Armijo, Michael Hons, Caroline Bissardon, Romain Linares, Matthew W. Bowler, Georg Wolff,, Kirill Kovalev, Anastasiia Babenko, Veijo T. Salo, Sarah Schneider, Christopher Rossi, Léa Lecomte, Thibault Deckers, Kévin Lauzier, Robert Ja
Opublikowane w: BioRxiv, 2024, ISSN 2692-8205
Wydawca: Biorxiv
DOI: 10.1101/2024.01.18.576170