Structure and Dynamics of Low-Complexity Regions in Proteins: The Huntingtin Case

Publikacje

Evidence of the Reduced Abundance of Proline cis Conformation in Protein Poly Proline Tracts

Autorzy: Annika Urbanek; Matija Popovic; Carlos A. Elena-Real; Anna Morató; Alejandro Estaña; Aurélie Fournet; Frédéric Allemand; Ana M. Gil; Carlos Cativiela; Juan Cortés; Ana I. Jiménez; Nathalie Sibille; Pau Bernadó
Opublikowane w: Journal of the American Chemical Society, Numer 142, 2020, Strona(/y) 7976, ISSN 0002-7863
Wydawca: American Chemical Society
DOI: 10.1021/jacs.0c02263

Site-Specific Isotopic Labeling (SSIL): Access to High-Resolution Structural and Dynamic Information in Low-Complexity Proteins.

Autorzy: Urbanek, Annika; Elena‐Real, Carlos A.; Popovic, Matija; Morató, Anna; Fournet, Aurélie; Allemand, Frédéric; Delbecq, Stephane; Sibille, Nathalie; Bernadó, Pau
Opublikowane w: ChemBioChem, Numer 5, 2020, Strona(/y) 769-775, ISSN 1439-7633
Wydawca: Wiley-VCH GmbH
DOI: 10.1002/cbic.201900583

Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database

Autorzy: Alejandro Estaña, Nathalie Sibille, Elise Delaforge, Marc Vaisset, Juan Cortés, Pau Bernadó
Opublikowane w: Structure, Numer 27, 2019, Strona(/y) 381-391, ISSN 0969-2126
Wydawca: Cell Press
DOI: 10.1016/j.str.2018.10.016

Disentangling the complexity of low complexity proteins

Autorzy: Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A Ouzounis, Vasilis J Promponas, Andrey V Kajava, John M Hancock, Silvio C E Tosatto, Zsuzsanna Dosztanyi, Miguel A Andrade-Navarro
Opublikowane w: Briefings in Bioinformatics, Numer 21, 2020, Strona(/y) 458-472, ISSN 1467-5463
Wydawca: Oxford University Press
DOI: 10.1093/bib/bbz007

The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context.

Autorzy: Pablo Mier; Carlos A. Elena-Real; Annika Urbanek; Pau Bernadó; Miguel A. Andrade-Navarro
Opublikowane w: Computational and Structural Biotechnology Journal, Numer 18, 2020, Strona(/y) 306-313, ISSN 2001-0370
Wydawca: Elsevier
DOI: 10.1016/j.csbj.2020.01.012

Flanking Regions Determine the Structure of the Poly-Glutamine in Huntingtin through Mechanisms Common among Glutamine-Rich Human Proteins

Autorzy: Annika Urbanek, Matija Popovic, Anna Morató, Alejandro Estaña, Carlos A Elena-Real, Pablo Mier, Aurélie Fournet, Frédéric Allemand, Stephane Delbecq, Miguel A Andrade-Navarro, Juan Cortés, Nathalie Sibille, Pau Bernadó
Opublikowane w: Structure, Numer 28, 2020, Strona(/y) 733-746, ISSN 0969-2126
Wydawca: Cell Press
DOI: 10.1016/j.str.2020.04.008

Robust Cell-Free Expression of Sub-Pathological and Pathological Huntingtin Exon-1 for NMR Studies. General Approaches for the Isotopic Labeling of Low-Complexity Proteins

Autorzy: Anna Morató, Carlos A Elena-Real, Matija Popovic, Aurélie Fournet, Karen Zhang, Frédéric Allemand, Nathalie Sibille, Annika Urbanek, Pau Bernadó
Opublikowane w: Biomolecules, Numer 10, 2020, Strona(/y) 1458, ISSN 2218-273X
Wydawca: MDPI
DOI: 10.3390/biom10101458

Investigating the Formation of Structural Elements in Proteins Using Local Sequence-Dependent Information and a Heuristic Search Algorithm

Autorzy: Estaña, Alejandro; Ghallab, Malik; Bernadó, Pau; Cortés, Juan
Opublikowane w: Molecules, Numer 24, 2019, Strona(/y) 1150, ISSN 1420-3049
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules24061150

Predicting Secondary Structure Propensities in IDPs Using Simple Statistics from Three-Residue Fragments

Autorzy: Alejandro Estaña, Amélie Barozet, Assia Mouhand, Marc Vaisset, Christophe Zanon, Pierre Fauret, Nathalie Sibille, Pau Bernadó, Juan Cortés
Opublikowane w: Journal of Molecuar Biology, Numer 432, 2020, Strona(/y) 5447-5459, ISSN 0022-2836
Wydawca: Academic Press
DOI: 10.1016/j.jmb.2020.07.026

A General Strategy to Access Structural Information at Atomic Resolution in Polyglutamine Homorepeats

Autorzy: Annika Urbanek, Anna Morató, Frédéric Allemand, Elise Delaforge, Aurélie Fournet, Matija Popovic, Stephane Delbecq, Nathalie Sibille, Pau Bernadó
Opublikowane w: Angewandte Chemie International Edition, Numer 57/14, 2018, Strona(/y) 3598-3601, ISSN 1433-7851
Wydawca: John Wiley & Sons Ltd.
DOI: 10.1002/anie.201711530

Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules

Autorzy: Alejandro Estaña, Kevin Molloy, Marc Vaisset, Nathalie Sibille, Thierry Siméon, Pau Bernadó, Juan Cortés
Opublikowane w: Parallel Computing, Numer 77, 2018, Strona(/y) 84-100, ISSN 0167-8191
Wydawca: Elsevier BV
DOI: 10.1016/j.parco.2018.06.005

Small-angle scattering studies of intrinsically disordered proteins and their complexes

Autorzy: Tiago N Cordeiro, Fátima Herranz-Trillo, Annika Urbanek, Alejandro Estaña, Juan Cortés, Nathalie Sibille, Pau Bernadó
Opublikowane w: Current Opinion in Structural Biology, Numer 42, 2017, Strona(/y) 15-23, ISSN 0959-440X
Wydawca: Elsevier BV
DOI: 10.1016/j.sbi.2016.10.011

Structural Characterization of Highly Flexible Proteins by Small-Angle Scattering.

Autorzy: Tiago N. Cordeiro, Fátima Herranz-Trillo, Annika Urbanek, Alejandro Estaña, Juan Cortés, Nathalie Sibille, Pau Bernadó
Opublikowane w: Advances in Experimental Medical Biology, 2017, Strona(/y) 107-129
Wydawca: Springer Singapore
DOI: 10.1007/978-981-10-6038-0_7

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