Understanding and manipulating the dynamics of chromosome topologies in transcriptional control

Publikacje

Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene.

Autorzy: Jaafar Alomairi; Anne Molitor; Nori Sadouni; Saadat Hussain; Magali Torres; Wiam Saadi; Lan T.M. Dao; Guillaume Charbonnier; David Santiago-Algarra; Jean-Christophe Andrau; Denis Puthier; Tom Sexton; Salvatore Spicuglia
Opublikowane w: PLoS ONE, Numer 15(5), 2020, Strona(/y) pp.e0233191, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0233191

Precise measurements of chromatin diffusion dynamics by modeling using Gaussian processes

Autorzy: Guilherme M Oliveira, Attila Oravecz, Dominique Kobi, Manon Maroquenne, Kerstin Bystricky, Tom Sexton, Nacho Molina
Opublikowane w: Nature Communications, Numer 12(1), 2021, Strona(/y) 6184, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-021-26466-7

Myod1 and GR coordinate myofiber-specific transcriptional enhancers

Autorzy: Daniela Rovito, Anna-Isavella Rerra, Vanessa Ueberschlag-Pitiot, Shilpy Joshi, Nezih Karasu, Vanessa Dacleu-Siewe, Khalil Ben Rayana, Kamar Ghaibour, Maxime Parisotto, Arnaud Ferry, Scott A Jelinsky, Gilles Laverny, Bruno P Klaholz, Tom Sexton, Isabelle M L Billas, Delphine Duteil, Daniel Metzger
Opublikowane w: Nucleic Acids Res, Numer 49(8), 2021, Strona(/y) 4472-4492, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkab226

Alternative Enhancer Usage and Targeted Polycomb Marking Hallmark Promoter Choice during T Cell Differentiation

Autorzy: Muhammad Ahmad Maqbool; Léo Pioger; Amal Zine El Aabidine; Nezih Karasu; Anne Molitor; Lan T.M. Dao; Guillaume Charbonnier; Francois van Laethem; Romain Fenouil; Frederic Koch; Georges Lacaud; Ivo Gut; Marta Gut; Sebastian Amigorena; Olivier Joffre; Tom Sexton; Salvatore Spicuglia; Jean-Christophe Andrau
Opublikowane w: https://hal-amu.archives-ouvertes.fr/hal-03015018, Numer 4, 2020, Strona(/y) 108048, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2020.108048

Autorzy: Rafael Alcalá-Vida, Jonathan Seguin, Caroline Lotz, Anne M Molitor, Ibai Irastorza-Azcarate, Ali Awada, Nezih Karasu, Aurélie Bombardier, Brigitte Cosquer, Jose Luis Gomez Skarmeta , Jean-Christophe Cassel, Anne-Laurence Boutillier, Thomas Sexton, Karine Merienne
Opublikowane w: Nature Communications, Numer 12(1), 2021, Strona(/y) 364, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-20605-2

Defining Functionally Relevant Spatial Chromatin Domains: It is a TAD Complicated

Autorzy: Natalia Sikorska, Tom Sexton
Opublikowane w: J. Mol. Biol., Numer 432(3), 2020, Strona(/y) 653-664, ISSN 0022-2836
Wydawca: Academic Press
DOI: 10.1016/j.jmb.2019.12.006

ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Autorzy: Yousra Ben Zouari, Anne M. Molitor, Natalia Sikorska, Vera Pancaldi, Tom Sexton
Opublikowane w: Genome Biology, Numer 20/1, 2019, ISSN 1474-760X
Wydawca: BMC
DOI: 10.1186/s13059-019-1706-3

4See: A Flexible Browser to Explore 4C Data

Autorzy: Yousra Ben Zouari, Angeliki Platania, Anne M. Molitor, Tom Sexton
Opublikowane w: Frontiers in Genetics, Numer 10, 2020, ISSN 1664-8021
Wydawca: Frontiers Media
DOI: 10.3389/fgene.2019.01372

Additional file 1: of ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Autorzy: Zouari, Yousra Ben; Molitor, Anne; Sikorska, Natalia; Pancaldi, Vera; Sexton, Tom
Opublikowane w: Genome Biology, Numer 20(1), 2021, Strona(/y) 6184, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.6084/m9.figshare.8172704

Additional file 3: of ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Additional file 2: of ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Autorzy: Zouari, Yousra Ben; Molitor, Anne; Sikorska, Natalia; Pancaldi, Vera; Sexton, Tom
Opublikowane w: Genome Biology, Numer 20(1), 2019, ISSN 1474-760X
Wydawca: Biomed Central
DOI: 10.6084/m9.figshare.8172713.v1

Transcriptional regulation and chromatin architecture maintenance are decoupled modular functions at the Sox2 locus

Autorzy: Tiegh Taylor, Natalia Sikorska, Virlana M Shchuka, Sanjay Chahar, Chenfan Ji, Neil N Macpherson, Sakthi D Moorthy, Jennifer A Mitchell, Tom Sexton
Opublikowane w: bioRxiv, 2022
Wydawca: Preprint
DOI: 10.1101/2022.02.09.479674

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