Peroxisome Interactions and Communication

Rezultaty

Researcher Declarations on Conformity
All ESRs are recruited
4.3 Awards of doctoral degrees

Awards of doctoral degrees. For universities with PhD programmes of 4 years (Netherlands and Belgium) and 4.5 years (Israel) this will be achieved only at months 54 and 60, respectively.

"4.2 Conference organisation ""Peroxisome Interactions and Communication"""

Conference organisation “Peroxisome Interactions and Communication”

4.1 Training School including scientific and transferable skills courses

Training Schools including scientific and transferable skills courses organized

PERICO vacancies advertised
5.1 Project website

Project website

5.5 Education Programme Report

Education Programme Report

5.6 Public dissemination of project results after protection

Public dissemination of project results after protection

Publikacje

Assessment of the Peroxisomal Redox State in Living Cells Using NADPH- and NAD+/NADH-Specific Fluorescent Protein Sensors

Autorzy: Cláudio F Costa Hongli Li Mohamed A F Hussein Yi Yang Celien Lismont Marc Fransen
Opublikowane w: Methods in Molecular Biology, Numer 2643, 2023, Strona(/y) 183-197, ISBN 978-1-0716-3048-8
Wydawca: Humana
DOI: 10.1007/978-1-0716-3048-8_13

Isolation of Glycosomes from Trypanosoma brucei

Autorzy: Krishna, C.K., Franke, L., Erdmann, R., Kalel, V.C.
Opublikowane w: Methods in Molecular Biology book series (MIMB, volume 2643), 2023, ISBN 978-1-0716-3048-8
Wydawca: Humana, New York, NY
DOI: 10.1007/978-1-0716-3048-8_3

Identification of Peroxisome-Derived Hydrogen Peroxide-Sensitive Target Proteins Using a YAP1C-Based Genetic Probe

Autorzy: Celien Lismont Iulia Revenco Cláudio F Costa Hongli Li Mohamed A F Hussein Paul P Van Veldhoven Rita Derua Marc Fransen
Opublikowane w: Methods in Molecular Biology, Numer 2643, 2023, Strona(/y) 161-181, ISBN 978-1-0716-3048-8
Wydawca: Humana
DOI: 10.1007/978-1-0716-3048-8_12

Applying CRISPR-Cas9 Genome Editing to Study Genes Involved in Peroxisome Biogenesis or Peroxisomal Functions

Autorzy: Chornyi S, Koster J, Waterham HR
Opublikowane w: Methods Mol Biol, Numer 2643, 2023, Strona(/y) 233-245, ISBN 978-1-0716-3047-1
Wydawca: Humana, New York, NY
DOI: 10.1007/978-1-0716-3048-8_17

Analysis of Yeast Peroxisomes via Spatial Proteomics

Autorzy: Hirak Das, Alexandros Zografakis, Silke Oeljeklaus, Bettina Warscheid
Opublikowane w: Methods in Molecular Biology (Peroxisomes: Methods and protocols), Numer Vol. 2643, 2023, Strona(/y) 13-31, ISBN 978-1-0716-3048-8
Wydawca: Humana
DOI: 10.1007/978-1-0716-3048-8_2

Peroxisomal Dysfunction and Oxidative Stress in Neurodegenerative Disease: A Bidirectional Crosstalk

Autorzy: Marc Fransen, Iulia Revenco, Hongli Li, Cláudio F. Costa, Celien Lismont, Paul P. Van Veldhoven
Opublikowane w: Peroxisome Biology: Experimental Models, Peroxisomal Disorders and Neurological Diseases, Numer 1299, 2020, Strona(/y) 19-30, ISBN 978-3-030-60203-1
Wydawca: Springer International Publishing
DOI: 10.1007/978-3-030-60204-8_2

Generation of Reporter Cell Lines for Endogenous Expression Analysis of Peroxisomal Proteins

Autorzy: Silva, Beatriz S. C.; Schrader, Tina A.; Schrader, Michael; Carmichael, Ruth E.
Opublikowane w: Methods Mol Biol, Numer 2643, 2023, Strona(/y) 247-270, ISSN 1940-6029
Wydawca: Springer
DOI: 10.1007/978-1-0716-3048-8_18

Organoids as a model to study intestinal and liver dysfunction in severe malnutrition

Autorzy: José M. Horcas-Nieto, Christian J. Versloot, Miriam Langelaar-Makkinje, Albert Gerding, Tjasso Blokzijl, Mirjam H. Koster, Mirjam Baanstra, Ingrid A. Martini, Robert P. Coppes, Céline Bourdon, Sven C.D. van Ijzendoorn, Peter Kim, Robert H.J. Bandsma, Barbara M. Bakker
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Numer 1869 (3), 2023, ISSN 0925-4439
Wydawca: Elsevier BV
DOI: 10.1016/j.bbadis.2022.166635

The Peroxisome-Autophagy Redox Connection: A Double-Edged Sword?

Autorzy: Hongli Li, Celien Lismont, Iulia Revenco, Mohamed A. F. Hussein, Cláudio F. Costa, Marc Fransen
Opublikowane w: Frontiers in Cell & Developmental Biology, 2021, Strona(/y) 1-16, ISSN 2296-634X
Wydawca: Frontiers Media S.A
DOI: 10.3389/fcell.2021.814047

The origin of long-chain fatty acids required for de novo ether lipid/plasmalogen synthesis.

Autorzy: Chornyi S, Ofman R, Koster J, Waterham HR
Opublikowane w: J Lipid Res, Numer 100364, 2023, Strona(/y) In press, ISSN 1539-7262
Wydawca: American Society for Biochemistry and Molecular Biology
DOI: 10.1016/j.jlr.2023.100364

Rebalancing of mitochondrial homeostasis through an NAD+-SIRT1 pathway preserves intestinal barrier function in severe malnutrition

Autorzy: Ling C, Versloot CJ, Arvidsson Kvissberg ME, Hu G, Swain N, Horcas-Nieto JM, Miraglia E, Thind MK, Farooqui A, Gerding A, van Eunen K, Koster MH, Kloosterhuis NJ, Chi L, ChenMi Y, Langelaar-Makkinje M, Bourdon C, Swann J, Smit M, de Bruin A, Youssef SA, Feenstra M, van Dijk TH, Thedieck K, Jonker JW, Kim PK, Bakker BM, Bandsma RHJ
Opublikowane w: EBioMedicine, Numer 96, 2023, Strona(/y) 104809, ISSN 2352-3964
Wydawca: Elsevier BV
DOI: 10.1016/j.ebiom.2023.104809

OrganelX web server for sub-peroxisomal and sub-mitochondrial protein localization and peroxisomal target signal detection

Autorzy: Marco Anteghini,Asmaa Haja,Vitor A.P. Martins dos Santos,Lambert Schomaker, Edoardo Saccentia
Opublikowane w: Computational and Structural Biotechnology Journal, Numer 21, 2022, Strona(/y) 128-133, ISSN 2001-0370
Wydawca: ScienceDirect
DOI: 10.1016/j.csbj.2022.11.058

Towards automatization of organoid analysis: A deep learning approach to localize and quantify organoid images

Autorzy: Asmaa Haja, José M. Horcas-Nieto, Barbara M. Bakker, Lambert Schomaker
Opublikowane w: Computer Methods and Programs in Biomedicine Update, Numer 3, 2023, ISSN 2666-9900
Wydawca: Elsevier BV
DOI: 10.1016/j.cmpbup.2023.100101

Insights Into the Peroxisomal Protein Inventory of Zebrafish

Autorzy: Kamoshita, Maki; Kumar, Rechal; Anteghini, Marco; Kunze, Markus; Islinger, Markus; Martins dos Santos, Vítor; Schrader, Michael
Opublikowane w: Frontiers in Physiology, 2022, ISSN 1664-042X
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.822509

The peroxisome: an update on mysteries 3.0

Autorzy: Kumar, Rechal; Islinger, Markus; Worthy, Harley; Carmichael, Ruth; Schrader, Michael
Opublikowane w: Histochem Cell Biol, Numer 161, 2024, Strona(/y) 99-132, ISSN 1432-119X
Wydawca: Springer
DOI: 10.1007/s00418-023-02259-5

Maintaining social contacts: The physiological relevance of organelle interactions

Autorzy: Beatriz S C Silva, Laura DiGiovanni, Rechal Kumar , Ruth E Carmichael, Peter K Kim, Michael Schrader
Opublikowane w: Biochim Biophys Acta Mol Cell Res, Numer 1867(11):118800, 2020, ISSN 0167-4889
Wydawca: Elsevier BV
DOI: 10.1016/j.bbamcr.2020.118800

Differential roles for ACBD4 and ACBD5 in peroxisome–ER interactions and lipid metabolism

Autorzy: Joseph L. Costello, Janet Koster, Beatriz S.C. Silva, Harley L. Worthy, Tina A. Schrader, Christian Hacker, Josiah Passmore, Frans A. Kuypers, Hans R. Waterham, Michael Schrader
Opublikowane w: J Biol Chem, Numer 299, 2023, Strona(/y) 105013, ISSN 1083-351X
Wydawca: Elsevier
DOI: 10.1016/j.jbc.2023.105013

Enhanced Levels of Peroxisome-Derived H2O2 Do Not Induce Pexophagy but Impair Autophagic Flux in HEK-293 and HeLa Cells

Autorzy: Hongli Li Celien Lismont Cláudio F Costa Mohamed A F Hussein Myriam Baes Marc Fransen
Opublikowane w: Antioxidants, Numer 12 (613), 2023, Strona(/y) 1-21, ISSN 2076-3921
Wydawca: MDPI
DOI: 10.3390/antiox12030613

Peroxisome-Derived Hydrogen Peroxide Modulates the Sulfenylation Profiles of Key Redox Signaling Proteins in Flp-In T-REx 293 Cells

Autorzy: Celien Lismont, Iulia Revenco, Hongli Li, Cláudio F. Costa, Lisa Lenaerts, Mohamed A. F. Hussein, Jonas De Bie, Bernard Knoops, Paul P. Van Veldhoven, Rita Derua, Marc Fransen
Opublikowane w: Frontiers in Cell and Developmental Biology, Numer 10:888873, 2022, Strona(/y) 1-19, ISSN 2296-634X
Wydawca: Frontiers Media S.A.
DOI: 10.3389/fcell.2022.888873

Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay

Autorzy: Mira Rosenthal 1, Eyal Metzl-Raz 1, Jérôme Bürgi 2, Eden Yifrach 1, Layla Drwesh 3, Amir Fadel 1, Yoav Peleg 4, Doron Rapaport 3, Matthias Wilmanns 2 5, Naama Barkai 1, Maya Schuldiner 6, Einat Zalckvar 6
Opublikowane w: PNAS, Numer 117 (35), 2020, Strona(/y) 21432-21440, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1920078117

Pex14p Phosphorylation Modulates Import of Citrate Synthase 2 Into Peroxisomes in Saccharomyces cerevisiae.

Autorzy: Andreas Schummer; Renate Maier; Shiran Gabay-Maskit; Tobias Hansen; Wignand W. D. Mühlhäuser; Ida Suppanz; Amir Fadel; Maya Schuldiner; Wolfgang Girzalsky; Silke Oeljeklaus; Silke Oeljeklaus; Einat Zalckvar; Ralf Erdmann; Bettina Warscheid; Bettina Warscheid
Opublikowane w: Frontiers in Cell and Developmental Biology, Numer 20, 2020, ISSN 2296-634X
Wydawca: Frontiers Media S.A.
DOI: 10.3389/fcell.2020.549451

Peroxisomal Hydrogen Peroxide Metabolism and Signaling in Health and Disease

Autorzy: Lismont, Revenco, Fransen
Opublikowane w: International Journal of Molecular Sciences, Numer 20/15, 2019, Strona(/y) 3673, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms20153673

DIMA: Data-Driven Selection of an Imputation Algorithm.

Autorzy: Janine Egert; Eva Brombacher; Bettina Warscheid; Clemens Kreutz
Opublikowane w: Journal of Proteome Research, Numer 20, 2021, ISSN 1535-3893
Wydawca: American Chemical Society
DOI: 10.1021/acs.jproteome.1c00119

Molecular basis of the glycosomal targeting of PEX11 and its mislocalization to mitochondrion in trypanosomes

Autorzy: Krishna, Chethan K.; Schmidt, Nadine; Tippler, Bettina G.; Schliebs, Wolfgang; Jung, Martin; Winklhofer, Konstanze F.; Erdmann, Ralf; Kalel, Vishal C.
Opublikowane w: Frontiers Cell and Developmental Biology, Numer 1, 2023, ISSN 2296-634X
Wydawca: Frontiers Media SA
DOI: 10.3389/fcell.2023.1213761

Peroxisomal Metabolite and Cofactor Transport in Humans.

Autorzy: Chornyi S, IJlst L, van Roermund CWT, Wanders RJA, Waterham HR
Opublikowane w: Front Cell Dev Biol, Numer 8, 2021, Strona(/y) 613892, ISSN 2296-634X
Wydawca: Frontiers Media SA
DOI: 10.3389/fcell.2020.613892

A Fully Automated End-to-End Process for Fluorescence Microscopy Images of Yeast Cells: From Segmentation to Detection and Classification

Autorzy: Asmaa Haja, Lambert Schomaker
Opublikowane w: Proceedings of 2021 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2021), 2021, Strona(/y) 10, ISBN 978-981-16-3880-0
Wydawca: Springer
DOI: 10.1007/978-981-16-3880-0_5

A Comparison of Different U-Net Models for Segmentation of Overlapping Organoids

Autorzy: Marco Anteghini, Asmaa Haja, Vitor AP Martins dos Santos, Lambert Schomaker, Edoardo Saccenti
Opublikowane w: ICBBE '22: Proceedings of the 2022 9th International Conference on Biomedical and Bioinformatics Engineering, 2022, Strona(/y) 1-10
Wydawca: Association for Computing Machinery (ACM)
DOI: 10.1145/3574198.3574199

Finding Balance: A series of U-Net models forImage Segmentation of Overlapping organoids

Autorzy: Stefania Radu, Asmaa Haja, Lambert Schomaker
Opublikowane w: 2022, Strona(/y) 1-19
Wydawca: University of Groningen

OrganelX Web Server for Sub-Peroxisomal and Sub-Mitochondrial protein localisation

Autorzy: Marco Anteghini, Asmaa Haja, Vitor AP Martins dos Santos, Lambert Schomaker, Edoardo Saccenti
Opublikowane w: 2022
Wydawca: bioRxiv
DOI: 10.1101/2022.06.21.497045

PEX1 is essential for the glycosome biogenesis and trypanosomatid parasite survival

Autorzy: Mahadevan, Lavanya; Arya, Hemant; Schliebs, Wolfgang; Erdmann, Ralf; Kalel, Vishal C.
Opublikowane w: BioRxiv, Numer 21, 2023, ISSN 2692-8205
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.08.05.550684

Unravelling the molecular mechanisms of peroxisome-organelle communication and interplay

Autorzy: Beatriz Silva
Opublikowane w: 2023
Wydawca: University of Exeter

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